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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mab21l1Mab-21-like 1. (359 aa)    
Predicted Functional Partners:
pdyn
Prodynorphin.
      
 0.558
LOC101169307
Angiomotin.
      
 0.549
thrsp
Thyroid hormone responsive.
    
  0.534
pknox1
Pbx/knotted 1 homeobox 1.1.
    
 
 0.495
maml2
MamL-1 domain-containing protein.
      
 0.483
meis1
Meis homeobox 1 b.
   
 
 0.477
pax6
Paired box protein Pax-6; May be a transcription factor with important functions in eye and nasal development; Belongs to the paired homeobox family.
   
  
 0.475
Maml3
Uncharacterized protein.
      
 0.454
tfap2a
Transcription factor AP-2 alpha.
   
  
 0.406
LOC100301611
Forkhead box E3.
      
 0.405
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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