STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mab21l1Mab-21-like 1. (359 aa)    
Predicted Functional Partners:
fam222a
Family with sequence similarity 222 member A.
    
   0.735
pdyn
Prodynorphin.
      
 0.715
LOC101169307
Angiomotin.
      
 0.710
maml2
MamL-1 domain-containing protein.
      
 0.668
meis1
Meis homeobox 1 b.
   
 
 0.618
Maml3
Uncharacterized protein.
      
 0.608
lhx2
LIM homeobox 2b.
   
 
 0.565
thrsp
Thyroid hormone responsive.
    
  0.561
LOC101155103
Uncharacterized protein.
      
 0.540
LOC101167788
RNA binding motif protein 39b.
      
 0.540
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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