Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nod1Nucleotide-binding oligomerization domain containing 1. (938 aa)    
Predicted Functional Partners:
ripk2
Receptor-interacting serine-threonine kinase 2.
   
 0.998
sugt1
SGT1 homolog, MIS12 kinetochore complex assembly cochaperone.
    
 0.969
traf6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 0.806
tab1
TGF-beta activated kinase 1/MAP3K7 binding protein 1.
   
 0.786
atg16l2
WD_REPEATS_REGION domain-containing protein.
    
 
 0.782
LOC101174762
Uncharacterized protein; Belongs to the peptidase C14A family.
   
 0.778
map3k7
Mitogen-activated protein kinase kinase kinase 7.
    
 0.749
LOC105356874
Protein kinase domain-containing protein.
    
 0.749
aamp
Angio-associated, migratory cell protein.
     
 0.747
sharpin
SHANK-associated RH domain interacting protein.
   
 
 0.738
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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