STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hemk1HemK methyltransferase family member 1. (340 aa)    
Predicted Functional Partners:
trmt112
tRNA methyltransferase subunit 11-2.
    
 0.968
cpox
Coproporphyrinogen oxidase.
   
 
 0.898
fech
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
    
 0.897
mtrf1
Mitochondrial translational release factor 1.
  
 
 0.845
mtrf1l
Mitochondrial translational release factor 1-like.
  
 
 0.832
c9h12orf65
Si:ch211-275j6.5.
  
 
 0.831
LOC101156645
Nicotinamide phosphoribosyltransferase; Belongs to the NAPRTase family.
  
 
 0.831
nampt
Nicotinamide phosphoribosyltransferase; Belongs to the NAPRTase family.
  
 
 0.831
fbxo5
F-box protein 5.
  
 
 0.831
etf1
Eukaryotic translation termination factor 1b.
    
 0.816
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.