STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hemk1HemK methyltransferase family member 1. (340 aa)    
Predicted Functional Partners:
mtrf1l
Mitochondrial translational release factor 1-like.
  
 
 0.878
trmt112
tRNA methyltransferase subunit 11-2.
    
 0.849
mtrf1
Mitochondrial translational release factor 1.
  
 
 0.823
fech
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
    
 0.729
c9h12orf65
Si:ch211-275j6.5.
  
 
 0.728
LOC101156645
Nicotinamide phosphoribosyltransferase; Belongs to the NAPRTase family.
  
 
 0.728
nampt
Nicotinamide phosphoribosyltransferase; Belongs to the NAPRTase family.
  
 
 0.728
fbxo5
F-box protein 5.
  
 
 0.728
cpox
Coproporphyrinogen oxidase.
     
 0.722
etf1
Eukaryotic translation termination factor 1b.
    
 0.709
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.