Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC101155869Histone deacetylase 12. (407 aa)    
Predicted Functional Partners:
rsrc1
Uncharacterized protein.
    
   0.723
ncor1
Nuclear receptor corepressor 1.
    
 0.685
ncor2
Nuclear receptor corepressor 2.
    
 0.685
H2M348_ORYLA
Tudor-knot domain-containing protein.
    
 0.681
arid4b
Translocase of outer mitochondrial membrane 20.
    
 0.681
Arid4a
Tudor domain-containing protein.
    
 0.681
sirt1
Deacetylase sirtuin-type domain-containing protein.
    
 0.666
cdt1
Chromatin licensing and DNA replication factor 1.
   
 
 0.637
sin3a
SIN3 transcription regulator family member Aa.
   
 0.613
sin3b
SIN3 transcription regulator family member B.
   
 0.613
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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