LOC101160985 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC101160985

Fatty acid binding protein 1b, tandem duplicate 1. (127 aa)

Predicted Functional Partners:

LOC101164843

0.964

LOC101168652

0.891

got2

0.873

APOH

0.871

APOH-2

0.871

H2MBB3_ORYLA

0.751

LOC101158990

0.751

LOC101156458

0.751

gsta4

0.741

LOC101164089

0.740

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APOH	H2MBB3_ORYLA	ENSORLP00000017331	ENSORLP00000015834	Uncharacterized protein.	Vitellogenin domain-containing protein.	0.700
APOH	LOC101156458	ENSORLP00000017331	ENSORLP00000041747	Uncharacterized protein.	Apolipoprotein Ba.	0.700
APOH	LOC101158990	ENSORLP00000017331	ENSORLP00000015852	Uncharacterized protein.	Apolipoprotein Bb, tandem duplicate 2.	0.700
APOH	LOC101160985	ENSORLP00000017331	ENSORLP00000004752	Uncharacterized protein.	Fatty acid binding protein 1b, tandem duplicate 1.	0.871
APOH	LOC101168652	ENSORLP00000017331	ENSORLP00000011437	Uncharacterized protein.	Alpha-2-HS-glycoprotein 2.	0.912
APOH-2	H2MBB3_ORYLA	ENSORLP00000017341	ENSORLP00000015834	Apolipoprotein H.	Vitellogenin domain-containing protein.	0.700
APOH-2	LOC101156458	ENSORLP00000017341	ENSORLP00000041747	Apolipoprotein H.	Apolipoprotein Ba.	0.700
APOH-2	LOC101158990	ENSORLP00000017341	ENSORLP00000015852	Apolipoprotein H.	Apolipoprotein Bb, tandem duplicate 2.	0.700
APOH-2	LOC101160985	ENSORLP00000017341	ENSORLP00000004752	Apolipoprotein H.	Fatty acid binding protein 1b, tandem duplicate 1.	0.871
APOH-2	LOC101168652	ENSORLP00000017341	ENSORLP00000011437	Apolipoprotein H.	Alpha-2-HS-glycoprotein 2.	0.912
H2MBB3_ORYLA	APOH	ENSORLP00000015834	ENSORLP00000017331	Vitellogenin domain-containing protein.	Uncharacterized protein.	0.700
H2MBB3_ORYLA	APOH-2	ENSORLP00000015834	ENSORLP00000017341	Vitellogenin domain-containing protein.	Apolipoprotein H.	0.700
H2MBB3_ORYLA	LOC101160985	ENSORLP00000015834	ENSORLP00000004752	Vitellogenin domain-containing protein.	Fatty acid binding protein 1b, tandem duplicate 1.	0.751
H2MBB3_ORYLA	LOC101164843	ENSORLP00000015834	ENSORLP00000036658	Vitellogenin domain-containing protein.	Lipocln_cytosolic_FA-bd_dom domain-containing protein; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.	0.549
H2MBB3_ORYLA	LOC101168652	ENSORLP00000015834	ENSORLP00000011437	Vitellogenin domain-containing protein.	Alpha-2-HS-glycoprotein 2.	0.767
LOC101156458	APOH	ENSORLP00000041747	ENSORLP00000017331	Apolipoprotein Ba.	Uncharacterized protein.	0.700
LOC101156458	APOH-2	ENSORLP00000041747	ENSORLP00000017341	Apolipoprotein Ba.	Apolipoprotein H.	0.700
LOC101156458	LOC101158990	ENSORLP00000041747	ENSORLP00000015852	Apolipoprotein Ba.	Apolipoprotein Bb, tandem duplicate 2.	0.905
LOC101156458	LOC101160985	ENSORLP00000041747	ENSORLP00000004752	Apolipoprotein Ba.	Fatty acid binding protein 1b, tandem duplicate 1.	0.751
LOC101156458	LOC101164843	ENSORLP00000041747	ENSORLP00000036658	Apolipoprotein Ba.	Lipocln_cytosolic_FA-bd_dom domain-containing protein; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.	0.549