STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dhx58DEXH (Asp-Glu-X-His) box polypeptide 58. (731 aa)    
Predicted Functional Partners:
ifih1
Interferon induced with helicase C domain 1.
  
0.981
LOC101162092
Ubiquitin specific peptidase 18; Belongs to the peptidase C19 family.
   
 
 0.966
fancl
FA complementation group L.
    
 0.870
fancg
Uncharacterized protein.
    
 0.864
fancf
FA complementation group F.
    
 0.861
fancb
FA complementation group B.
   
 0.860
fancc
FA complementation group C.
    
 0.849
mus81
MUS81 structure-specific endonuclease subunit.
    
 0.804
ercc1
Excision repair cross-complementation group 1.
    
 0.771
faap24
FA core complex associated protein 24.
    
 0.771
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.