Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
LOC111947535Si:zfos-323e3.4. (805 aa)    
Predicted Functional Partners:
clcn6
Chloride channel 6; Belongs to the chloride channel (TC 2.A.49) family.
      
 0.654
dcn
Decorin; May affect the rate of fibrils formation.
  
     0.531
lrrc20
Leucine rich repeat containing 20.
  
     0.525
prelp
Proline/arginine-rich end leucine-rich repeat protein.
  
     0.524
H2MN86_ORYLA
ADP-ribosylation factor 6b.
    
 0.522
lum
Lumican.
  
     0.519
H2MBJ4_ORYLA
Uncharacterized protein.
  
     0.514
kera
Keratocan.
  
     0.514
chad
Chondroadherin.
  
     0.512
LOC101169311
Translocase of outer mitochondrial membrane 20.
      
 0.500
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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