Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
WIPI1Uncharacterized protein. (441 aa)    
Predicted Functional Partners:
atg16l2
WD_REPEATS_REGION domain-containing protein.
   
 0.992
atg2a
Autophagy related 2A.
    
 0.973
ATG2B
Autophagy related 2B.
    
 0.973
atg5
Autophagy protein 5; Involved in autophagic vesicle formation.
    
 0.929
atg12
Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.
    
 0.912
wipi2
WD repeat domain, phosphoinositide interacting 2.
  
  
0.904
LOC101159269
WD repeat domain, phosphoinositide interacting 1.
  
  
 
0.901
atg7
ATG7 autophagy related 7 homolog (S. cerevisiae).
    
 0.852
atg3
Autophagy-related protein 3.
    
 0.846
becn1
Beclin 1.
    
 0.825
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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