STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
map1bMicrotubule-associated protein 1B. (1965 aa)    
Predicted Functional Partners:
LOC101154983
Fragile X mental retardation, autosomal homolog 2.
    
 
 0.584
fxr1
Fragile X mental retardation, autosomal homolog 1.
    
 
 0.558
fmr1
Fragile X mental retardation 1.
    
 
 0.551
GAN
Gigaxonin.
    
 
 0.526
ppp1r36
Uncharacterized protein.
      
 0.510
robo4
Roundabout, axon guidance receptor, homolog 4 (Drosophila).
   
  
 0.506
srgap2
SLIT-ROBO Rho GTPase activating protein 2.
      
 0.503
LOC101166367
CREB regulated transcription coactivator 3.
      
 0.493
becn1
Beclin 1.
      
 0.465
VMP1
Vacuole membrane protein 1.
      
 0.454
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.