Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
map1bMicrotubule-associated protein 1B. (1965 aa)    
Predicted Functional Partners:
LOC101154983
Fragile X mental retardation, autosomal homolog 2.
    
 
 0.675
fxr1
Fragile X mental retardation, autosomal homolog 1.
    
 
 0.664
kif2a
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
   
 
 0.652
fmr1
Fragile X mental retardation 1.
    
 
 0.635
becn1
Beclin 1.
      
 0.591
GAN
Gigaxonin.
    
 
 0.562
LOC101167445
TAR DNA binding protein.
    
 
 0.544
tardbp
TAR DNA binding protein, like.
    
 
 0.544
H2MMP5_ORYLA
Microtubule-associated protein.
   
 
 0.525
LOC101165870
Microtubule-associated protein.
   
 
 0.525
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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