STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mifMacrophage migration inhibitory factor. (115 aa)    
Predicted Functional Partners:
GOT1
Aspartate aminotransferase.
   
 
 0.929
got1
Aspartate aminotransferase.
   
 
 0.929
got2
Aspartate aminotransferase.
   
 
 0.926
tat
Tyrosine aminotransferase; Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate.
     
 0.920
LOC101165831
4-hydroxyphenylpyruvate dioxygenase.
     
 0.911
LOC101163441
Amine oxidase.
     
  0.901
LOC101161073
Amine oxidase.
     
  0.901
LOC101171229
Amine oxidase.
     
  0.901
LOC105356325
Amine oxidase.
     
  0.901
LOC101160780
Amine oxidase.
     
  0.900
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.