Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SERTM1Serine rich and transmembrane domain containing 1. (114 aa)    
Predicted Functional Partners:
TMEM164
Transmembrane protein 164.
      
 0.743
tmem14a
Zgc:163080.
      
 0.722
fam91a1
Family with sequence similarity 91 member A1.
      
 0.714
st3gal3
Uncharacterized protein; Belongs to the glycosyltransferase 29 family.
      
 0.598
mras
Muscle RAS oncogene homolog.
   
  
 0.543
dennd1a
DENN/MADD domain containing 1A.
      
 0.516
LOC101162919
Tight junction protein 3; Belongs to the MAGUK family.
      
 0.494
ADCYAP1
Adenylate cyclase activating polypeptide 1a.
   
  
 0.416
LOC101165591
Adenylate cyclase activating polypeptide 1b.
   
  
 0.416
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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