Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
wdr82WD repeat domain 82. (600 aa)    
Predicted Functional Partners:
ash2l
Ash2 like, histone lysine methyltransferase complex subunit.
   
 0.996
rbbp5
Retinoblastoma binding protein 5.
    
 0.995
LOC101175046
Uncharacterized protein.
   
 0.993
cxxc1
CXXC finger protein 1b.
   
 0.993
setd1b
SET domain containing 1B, histone lysine methyltransferase a.
   
 0.986
LOC101168786
SET domain containing 1A, histone lysine methyltransferase.
   
 0.986
wdr5
WD repeat domain 5.
   
0.977
WDR33
WD repeat domain 33.
   
 0.961
cpsf4
Cleavage and polyadenylation specific factor 4.
   
 0.958
LOC101158483
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
   
 0.951
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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