Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101169630Spartin a. (636 aa)    
Predicted Functional Partners:
LOC101169382
Spartin a.
  
  
 
0.905
LOC101155128
Spartin b.
  
  
 
0.905
ENSORLP00000030460
Thymosin beta; Plays an important role in the organization of the cytoskeleton. Binds to and sequesters actin monomers (G actin) and therefore inhibits actin polymerization. Belongs to the thymosin beta family.
      
 0.827
ist1
IST1 factor associated with ESCRT-III.
    
 
 0.770
wwp1
WW domain containing E3 ubiquitin protein ligase 1.
    
 
 0.469
wwp2
E3 ubiquitin-protein ligase.
    
 
 0.469
LOC101174746
E3 ubiquitin-protein ligase.
    
 
 0.469
LOC101167949
E3 ubiquitin-protein ligase.
    
 
 0.469
nipa1
NIPA magnesium transporter 1.
      
 0.463
spg21
SPG21 abhydrolase domain containing, maspardin.
      
 0.462
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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