Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101161779Low density lipoprotein receptor b. (843 aa)    
Predicted Functional Partners:
ldlrap1
Low density lipoprotein receptor adaptor protein 1b.
    
 0.968
dab2
DAB adaptor protein 2.
    
 0.948
LOC101174278
Low density lipoprotein receptor adaptor protein 1a.
    
  0.942
LOC101167490
Si:dkey-19b23.8.
    
  0.920
LOC101163219
Si:dkey-71h2.2.
    
  0.920
LOC101166361
Uncharacterized protein.
  
  
 
0.903
pcsk9
Proprotein convertase subtilisin/kexin type 9; Belongs to the peptidase S8 family.
    
 0.830
H2LIM0_ORYLA
Uncharacterized protein.
    
 0.773
ENSORLP00000034659
Reelin domain-containing protein.
    
 0.773
LOC101172441
DAB adaptor protein 1b.
    
 0.755
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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