Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nid2Nidogen 2a (osteonidogen). (1523 aa)    
Predicted Functional Partners:
nid1
Nidogen 1a.
     
 
0.900
LOC101171549
Nidogen 1b.
     
 
0.900
hspg2
Heparan sulfate proteoglycan 2.
   
 0.853
lamb3
Uncharacterized protein.
   
 0.691
lamc1
Uncharacterized protein.
   
 0.677
LOC101156437
Uncharacterized protein.
   
 0.677
lamc3
Laminin, gamma 3.
   
 0.677
agrn
Agrin.
   
 0.664
H2MQX0_ORYLA
Si:ch211-241e1.3.
   
 0.634
lama4
Laminin, alpha 4.
   
 0.634
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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