Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC101166146Rap guanine nucleotide exchange factor (GEF) 5a. (899 aa)    
Predicted Functional Partners:
mras
Muscle RAS oncogene homolog.
    
 0.596
ckap5
Cytoskeleton associated protein 5.
      
 0.576
RIMS2
Regulating synaptic membrane exocytosis 2.
   
 
 0.531
ENSORLP00000026521
Uncharacterized protein.
   
 
 0.531
ENSORLP00000034554
C2 domain-containing protein.
   
 
 0.531
slc35c1
Solute carrier family 35 member C1.
      
 0.520
LOC101167529
RAP1A, member of RAS oncogene family b.
    
 0.515
LOC101172864
Uncharacterized protein.
    
 0.515
LOC101171247
RAP1A, member of RAS oncogene family a.
    
 0.515
adam23
ADAM metallopeptidase domain 23.
      
 0.499
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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