Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
txndc16Thioredoxin domain containing 16. (830 aa)    
Predicted Functional Partners:
foxred2
FAD-dependent oxidoreductase domain containing 2.
    
 
 0.944
hspa5
Uncharacterized protein; Belongs to the heat shock protein 70 family.
   
 0.744
styx
Serine/threonine/tyrosine interacting protein.
     
 0.735
stxbp4
Syntaxin binding protein 4.
      
 0.721
khk
Ketohexokinase.
      
 0.711
gpr137c
G protein-coupled receptor 137c.
      
 0.694
rtraf
RNA transcription, translation and transport factor.
      
 0.692
zbtb34
Zinc finger and BTB domain containing 34.
    
 
 0.623
psmc6
Proteasome 26S subunit, ATPase 6; Belongs to the AAA ATPase family.
    
 
 0.617
eef1g
Eukaryotic translation elongation factor 1 gamma.
   
 
 0.609
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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