STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mtcl1Microtubule crosslinking factor 1. (1899 aa)    
Predicted Functional Partners:
rbm33
RNA binding motif protein 33a.
      
 0.759
igbp1
Immunoglobulin (CD79A) binding protein 1.
      
 0.731
hook2
Hook microtubule-tethering protein 2.
      
 0.692
PPP2R2C
Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.
    
   0.655
anapc4
Anaphase-promoting complex subunit 4; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. Belongs to the APC4 family.
      
 0.649
LOC101155453
MAP/microtubule affinity-regulating kinase 4a.
    
 
 0.637
LOC101163264
Non-specific serine/threonine protein kinase.
    
 
 0.637
MARK1
Non-specific serine/threonine protein kinase.
    
 
 0.637
LOC101170071
Non-specific serine/threonine protein kinase.
    
 
 0.637
mark3
Non-specific serine/threonine protein kinase.
    
 
 0.637
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.