STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mtrf1lMitochondrial translational release factor 1-like. (432 aa)    
Predicted Functional Partners:
n6amt1
N-6 adenine-specific DNA methyltransferase 1.
  
 
 0.852
mrps11
Mitochondrial ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family.
 
 
 0.833
mrpl20
Mitochondrial ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family.
 
 
 0.833
hemk1
HemK methyltransferase family member 1.
  
 
 0.832
MRPL49
Mitochondrial ribosomal protein L49.
   
 
 0.812
mrpl27
Mitochondrial ribosomal protein L27.
  
 
 0.800
mrps7
Mitochondrial ribosomal protein S7.
  
 
 0.798
mrpl13
Mitochondrial ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.
 
 
 0.795
mrpl58
Mitochondrial ribosomal protein L58.
   
 
 0.791
mrps31
Mitochondrial ribosomal protein S31.
   
 
 0.788
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.