STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
acot11Acyl-coenzyme A thioesterase 11. (584 aa)    
Predicted Functional Partners:
rttn
Rotatin.
      
 0.813
grk4
G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.
      
 0.813
cwc25
CWC25 spliceosome associated protein homolog.
   
    0.609
RUBCNL
Rubicon like autophagy enhancer.
   
    0.609
c11h1orf109
C19h1orf109 homolog (H. sapiens).
   
    0.609
etfa
Electron transfer flavoprotein subunit alpha.
    
 0.604
hadh
Hydroxyacyl-CoA dehydrogenase.
  
 
 0.603
cryl1
Crystallin, lambda 1.
  
 
 0.602
ftsj1
FtsJ RNA 2'-O-methyltransferase 1.
   
    0.592
LOC101175409
Limb and CNS expressed 1.
   
    0.576
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.