Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rfxapRegulatory factor X-associated protein. (215 aa)    
Predicted Functional Partners:
rfxank
Regulatory factor X-associated ankyrin-containing protein.
    
 
 0.997
rfx5
Regulatory factor X, 5.
    
 
 0.995
ankra2
Ankyrin repeat, family A (RFXANK-like), 2.
    
 
 0.881
ENSORLP00000042692
Class II, major histocompatibility complex, transactivator.
      
 0.856
rd3l
Uncharacterized protein.
      
 0.722
LOC101161970
Regulatory factor X7b.
    
 
 0.720
GPR139
G protein-coupled receptor 139.
      
 0.692
gpr146
G_PROTEIN_RECEP_F1_2 domain-containing protein.
      
 0.683
rfx4
Regulatory factor X, 4.
    
 
 0.610
LOC101168154
MAP6 domain containing 1.
      
 0.600
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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