Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CDCA7Lzf-4CXXC_R1 domain-containing protein. (414 aa)    
Predicted Functional Partners:
rad17
RAD17 checkpoint clamp loader component.
   
 0.882
rad1
RAD1 homolog (S. pombe).
    
 0.880
hus1
Checkpoint protein; Belongs to the HUS1 family.
    
 0.880
rfc4
Replication factor C (activator 1) 4.
   
 0.877
rfc2
Replication factor C (activator 1) 2.
   
 0.869
slf1
SMC5-SMC6 complex localization factor 1.
    
 0.869
rfc3
Replication factor C (activator 1) 3.
   
 0.852
rfc5
Replication factor C (activator 1) 5.
   
 0.848
topbp1
DNA topoisomerase II binding protein 1.
    
 0.802
Atm
Uncharacterized protein.
    
 0.801
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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