STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prxl2cPeroxiredoxin like 2C. (248 aa)    
Predicted Functional Partners:
LOC101155972
Uncharacterized protein.
      
 0.747
fbxl17
F-box and leucine-rich repeat protein 17.
      
 0.692
znf367
Zinc finger protein 367.
      
 0.608
Mrps27
Mitochondrial ribosomal protein S27.
      
 0.606
trip12
Thyroid hormone receptor interactor 12.
      
 0.599
ubox5
U-box domain containing 5.
      
 0.594
LOC101160985
Fatty acid binding protein 1b, tandem duplicate 1.
      
 0.567
sox7
Uncharacterized protein.
      
 0.512
Selu
Uncharacterized protein.
      
 0.511
H2M7N6_ORYLA
Uncharacterized protein.
      
 0.511
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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