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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100049435Hairy-related 12. (145 aa)    
Predicted Functional Partners:
RNF207
Ring finger protein 207.
    
 
 0.814
nol9
Nucleolar protein 9.
      
 0.813
grik5
Glutamate receptor, ionotropic, kainate 5.
      
 0.560
fancg
Uncharacterized protein.
   
 
 0.540
fancl
FA complementation group L.
    
 
 0.534
fancf
FA complementation group F.
    
 
 0.528
fancc
FA complementation group C.
    
   0.521
neurod1
Neurogenic differentiation factor.
   
 0.518
atoh7
Atonal bHLH transcription factor 7.
   
 
 0.473
neurog1
Neurogenin 1.
   
 0.473
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.