Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100049435Hairy-related 12. (145 aa)    
Predicted Functional Partners:
neurod1
Neurogenic differentiation factor.
    
 0.667
nol9
Nucleolar protein 9.
      
 0.652
neurog1
Neurogenin 1.
    
 0.637
RNF207
Ring finger protein 207.
    
 
 0.624
ENSORLP00000032832
BHLH domain-containing protein.
    
 0.610
atoh7
Atonal bHLH transcription factor 7.
    
 
 0.594
hand2
Heart and neural crest derivatives expressed 2.
    
 0.584
ascl1
Achaete-scute family bHLH transcription factor 1a.
   
 0.556
atoh1
Atonal bHLH transcription factor 1a.
    
 
 0.532
olig2
Oligodendrocyte lineage transcription factor 2.
    
 0.494
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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