STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2LG67_ORYLAUncharacterized protein. (198 aa)    
Predicted Functional Partners:
rpgr
Uncharacterized protein.
    
 
 0.922
LOC101169422
Retinitis pigmentosa GTPase regulator b.
    
 
 0.922
nphp4
Uncharacterized protein.
    
 0.898
rcc1
Regulator of chromosome condensation 1.
    
 
 0.756
nek8
NIMA-related kinase 8.
    
 
 0.686
nphp1
Nephronophthisis 1.
    
 0.662
acaa2
Acetyl-CoA acyltransferase 2; Belongs to the thiolase-like superfamily. Thiolase family.
    
 
 0.569
ift88
Intraflagellar transport 88 homolog.
   
  
 0.566
iqcb1
IQ motif containing B1.
    
 
 0.562
foxred1
FAD-dependent oxidoreductase domain containing 1.
      
 0.560
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.