Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
prdm2PR domain containing 2, with ZNF domain b. (1677 aa)    
Predicted Functional Partners:
LOC105356017
C-type lectin domain-containing protein.
    
 0.796
camkmt
Calmodulin-lysine N-methyltransferase.
     
 0.668
plod2
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2.
     
  0.650
plod1
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1a.
     
  0.650
Plod3
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3.
     
  0.650
brca2
BRCA2 DNA repair associated.
      
 0.610
LOC101164361
C-type lectin domain-containing protein.
    
 0.569
LOC111946877
C-type lectin domain-containing protein.
    
 0.569
ENSORLP00000041786
C-type lectin domain-containing protein.
    
 0.569
LOC110017541
C-type lectin domain-containing protein.
    
 0.569
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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