STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nim1kNIM1 serine/threonine protein kinase; Belongs to the protein kinase superfamily. (471 aa)    
Predicted Functional Partners:
ENSORLP00000026044
5-hydroxytryptamine (serotonin) receptor 1A b.
    
 
 0.827
UNC13B
Unc-13 homolog B.
   
  
 0.789
stoml2
Stomatin (EPB72)-like 2.
      
 0.716
Htr1a
5-hydroxytryptamine receptor 1A.
    
 
 0.658
ghr
Uncharacterized protein.
      
 0.607
ghr-2
Uncharacterized protein.
      
 0.590
rptor
Regulatory associated protein of MTOR, complex 1.
    
 0.543
ENSORLP00000044940
Purkinje cell protein 4 like 1.
    
 
 0.529
cetn3
Centrin 3.
    
 0.462
LOC101170769
Centrin, EF-hand protein, 2.
    
 0.462
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.