Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lhx8LIM homeobox 8b. (365 aa)    
Predicted Functional Partners:
figla
BHLH domain-containing protein.
   
 0.819
LOC101162780
LIM domain binding 1a.
    
 0.649
ldb2
LIM domain binding 2a.
    
 0.649
LOC101158085
LIM-domain binding 1b.
    
 0.649
fbxo47
F-box domain-containing protein.
      
 0.618
dlx1
Distal-less homeobox 1a.
   
 
 0.605
LOC101170553
NME/NM23 family member 8; Belongs to the NDK family.
    
   0.600
cryz
Crystallin, zeta (quinone reductase).
    
 
 0.570
rec8
REC8 meiotic recombination protein b.
   
 
 0.546
ccnh
Cyclin H; Belongs to the cyclin family.
     
 0.518
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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