STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101158786Cholinergic receptor, nicotinic, alpha 10a. (505 aa)    
Predicted Functional Partners:
CHRNA1
Cholinergic receptor nicotinic alpha 1 subunit.
  
 
0.692
CHRNA1-2
Cholinergic receptor nicotinic alpha 1 subunit.
  
 
0.691
LYPD6
LY6/PLAUR domain containing 6.
    
 0.655
LOC101155633
Uncharacterized protein.
  
 
0.654
LOC101167346
Uncharacterized protein.
  
 
0.654
LOC101162456
Si:ch73-380n15.2.
  
 
0.652
LOC101168927
Uncharacterized protein.
   
 
0.644
LOC101160921
Si:ch211-39a7.1.
   
 
0.644
LOC101166204
Uncharacterized protein.
   
 
0.644
ulk4
Unc-51 like kinase 4.
      
 0.559
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.