STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppcsPhosphopantothenoylcysteine synthetase. (321 aa)    
Predicted Functional Partners:
LOC101175261
Pantothenate kinase 1a.
     
 0.969
LOC101161204
Pantothenate kinase 2.
     
 0.969
coasy
CoA synthase.
  
 0.961
pank4
Pantothenate kinase.
     
 0.948
ppcdc
Phosphopantothenoylcysteine decarboxylase.
    
 0.947
hlcs
Holocarboxylase synthetase.
  
 
 0.916
kyat1
Kynurenine aminotransferase 1.
  
  0.830
LOC101173380
Kynurenine aminotransferase 3.
  
  0.830
cth
Cystathionase (cystathionine gamma-lyase), like.
   
 
 0.810
GOT1
Aspartate aminotransferase.
    
  0.802
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.