STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
twist1Twist family bHLH transcription factor 1a. (185 aa)    
Predicted Functional Partners:
LOC101161725
BHLH domain-containing protein.
    
 
 0.610
tcf12
Transcription factor 12.
    
 
 0.595
grk3
G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.
      
 0.553
LOC101157208
Snail family zinc finger 1a.
   
  
 0.525
LOC101160236
Snail family zinc finger 1b.
   
  
 0.512
Myo15b
Myosin XVB.
   
  
 0.467
prrx1
Paired related homeobox 1a.
   
  
 0.461
ccdc177
Uncharacterized protein.
      
 0.452
tbx15
T-box transcription factor 15.
   
  
 0.451
hdac9
Histone deacetylase 9b.
   
 
 0.431
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.