STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
snx13Sorting nexin 13. (954 aa)    
Predicted Functional Partners:
LOC101161191
Family with sequence similarity 113.
      
 0.855
LOC101166386
Fructosamine 3 kinase related protein; Belongs to the fructosamine kinase family.
 
      0.850
ankmy2
Ankyrin repeat and MYND domain containing 2a.
    
 
 0.781
stard3
StAR-related lipid transfer (START) domain containing 3.
      
 0.714
traf3ip1
TNF receptor-associated factor 3 interacting protein 1.
      
 0.597
LOC101156837
Stromal interaction molecule 1a.
      
 0.594
LOC101164993
Stromal interaction molecule 1b.
      
 0.594
LOC101169255
Uncharacterized protein.
   
 
0.582
SNX14
Sorting nexin 14.
   
 
0.582
vamp7
Synaptobrevin-like 1; Belongs to the synaptobrevin family.
      
 0.569
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.