STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
snx13Sorting nexin 13. (954 aa)    
Predicted Functional Partners:
ankmy2
Ankyrin repeat and MYND domain containing 2a.
      
 0.877
LOC101161191
Family with sequence similarity 113.
      
 0.864
LOC101166386
Fructosamine 3 kinase related protein; Belongs to the fructosamine kinase family.
 
 
    0.851
LOC101169255
Uncharacterized protein.
   
 
 0.815
SNX14
Sorting nexin 14.
   
 
 0.815
LOC101171158
Tetraspanin.
    
   0.709
LOC101157617
Tetraspanin.
    
   0.709
CAAP1
Caspase activity and apoptosis inhibitor 1.
      
 0.708
LOC101171845
Tetraspanin 13b; Belongs to the tetraspanin (TM4SF) family.
    
 
 0.705
LOC101160507
Tetraspanin 13a; Belongs to the tetraspanin (TM4SF) family.
    
 
 0.705
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.