Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
A3GALT2Alpha 1,3-galactosyltransferase 2. (341 aa)    
Predicted Functional Partners:
gla
Alpha-galactosidase.
     
 0.904
LOC101162446
UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5.
     
 0.810
LOC101160972
UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6.
     
 0.810
hexb
Beta-hexosaminidase.
     
 0.807
LOC101172329
Beta-hexosaminidase.
     
 0.807
neu3b
Sialidase 3b.
    
  0.803
neu4
Sialidase 4.
    
  0.803
arsa
Arylsulfatase A.
   
 
  0.803
neu3
Sialidase 3a.
    
  0.803
glb1
Beta-galactosidase.
   
 
  0.802
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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