STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101168633Uncharacterized protein. (290 aa)    
Predicted Functional Partners:
LOC101169531
Sortilin.
    
 
 0.666
ctsh
Cathepsin H; Belongs to the peptidase C1 family.
   
 0.657
LOC101157659
Sortilin.
    
 
 0.652
cs
Citrate synthase; Belongs to the citrate synthase family.
   
   0.601
LOC101158853
Sortilin.
    
 
 0.599
drg1
Developmentally regulated GTP binding protein 1.
    
   0.591
pole2
DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.
    
   0.591
H2MLD6_ORYLA
Zgc:103697.
    
   0.591
c6h15orf40
Zgc:193812.
    
   0.591
nudt1
Nudix (nucleoside diphosphate linked moiety X)-type motif 1; Belongs to the Nudix hydrolase family.
    
 
 0.568
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.