Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
itgb6Integrin beta; Belongs to the integrin beta chain family. (757 aa)    
Predicted Functional Partners:
itgav
Integrin, alpha V; Belongs to the integrin alpha chain family.
   
 0.979
itga8
Integrin, alpha 8; Belongs to the integrin alpha chain family.
   
 0.965
LOC101171095
Zmp:0000000846.
   
0.960
LOC101170815
Tenascin C.
   
0.960
tln2
Talin 2b.
   
 0.955
LOC101173776
Talin 2a.
   
 0.955
ptk2
Protein tyrosine kinase 2ab; Belongs to the protein kinase superfamily. Tyr protein kinase family.
   
 0.955
tln1
Talin 1.
   
 0.954
tnr
Tenascin R (restrictin, janusin).
   
0.953
H2LRH6_ORYLA
Uncharacterized protein.
    
 0.945
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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