STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
itgb6Integrin beta; Belongs to the integrin beta chain family. (757 aa)    
Predicted Functional Partners:
LOC101157631
Transforming growth factor beta; Belongs to the TGF-beta family.
   
 0.957
itga8
Integrin, alpha 8; Belongs to the integrin alpha chain family.
   
 0.955
LOC101171095
Zmp:0000000846.
   
0.954
tnr
Tenascin R (restrictin, janusin).
   
0.950
tnn
Tenascin N.
   
0.949
H2LRH6_ORYLA
Uncharacterized protein.
    
 0.948
tln1
Talin 1.
   
 0.941
fn1
Fibronectin-1.
   
 
 0.941
SRC
Tyrosine-protein kinase.
   
 0.930
LOC101164480
Tyrosine-protein kinase.
   
 0.930
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.