Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fam133bUncharacterized protein. (259 aa)    
Predicted Functional Partners:
c21h3orf70
Zgc:162707.
      
 0.669
rnf151
Ring finger protein 151.
    
   0.609
thoc7
THO complex 7.
      
 0.605
thoc3
THO complex 3.
      
 0.601
knop1
SMAP domain-containing protein.
      
 0.597
card14
Caspase recruitment domain family, member 14.
      
 0.579
thoc6
THO complex 6.
      
 0.534
ccdc174
Coiled-coil domain containing 174.
   
    0.526
LOC101174943
Discs, large homolog 5a (Drosophila); Belongs to the MAGUK family.
      
 0.513
nkapd1
Zgc:162339.
    
   0.512
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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