Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC101161789Collagen beta(1-O)galactosyltransferase 2. (610 aa)    
Predicted Functional Partners:
plod2
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2.
   
0.947
plod1
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1a.
   
0.947
Plod3
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3.
   
0.947
mgat4c
Mgat4 family member C.
      
 0.605
LOC101175155
Uncharacterized protein.
      
 0.605
BBOF1
Basal body orientation factor 1.
      
 0.563
LOC101171843
Uncharacterized protein.
    
  0.503
colq
Collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase.
    
  0.503
ENSORLP00000042136
Uncharacterized protein.
   
 0.502
LOC101160659
Collagen beta(1-O)galactosyltransferase 1.
     
  0.493
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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