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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2LGJ7_ORYLASi:ch211-131k2.3. (167 aa)    
Predicted Functional Partners:
ppp5c
Serine/threonine-protein phosphatase.
    
 0.904
trap1
TNF receptor-associated protein 1.
   
 0.850
LOC101169506
Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 2.
   
 0.850
tsc1
TSC complex subunit 1b.
   
 0.850
ENSORLP00000031311
Uncharacterized protein.
   
 0.850
hsp90ab1
Heat shock protein 90, alpha (cytosolic), class B member 1.
   
 0.850
hsp90b1
Heat shock protein 90, beta (grp94), member 1.
   
 0.833
nktr
Natural killer cell triggering receptor.
   
 0.833
PPIG
Peptidylprolyl isomerase G.
   
 0.833
ppid
Peptidylprolyl isomerase D.
   
 0.833
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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