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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
halHistidine ammonia-lyase; Belongs to the PAL/histidase family. (654 aa)    
Predicted Functional Partners:
uroc1
Urocanate hydratase 1.
 
 
 0.986
amdhd1
Amidohydrolase domain containing 1.
 
 
 0.957
cndp2
Carnosine dipeptidase 2.
    
 0.929
hdc
Histidine decarboxylase.
     
 0.925
gda
Guanine deaminase; Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia; Belongs to the metallo-dependent hydrolases superfamily. ATZ/TRZ family.
  
 
 0.898
arg2
Arginase.
  
 
 0.854
LOC101171114
Arginase.
  
 
 0.854
agmat
Agmatine ureohydrolase (agmatinase); Belongs to the arginase family.
  
 
 0.854
ftcd
Formimidoyltransferase cyclodeaminase.
 
  
 0.824
gldc
Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.
   
  
 0.762
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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