STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MYOZ1Myozenin 1. (315 aa)    
Predicted Functional Partners:
myot
Uncharacterized protein.
   
  
 0.793
mylpf
Myosin light chain, phosphorylatable, fast skeletal muscle a.
   
  
 0.776
LOC101159505
Titin-cap (telethonin).
   
 
 0.726
LOC101171577
Si:rp71-17i16.4.
   
  
 0.707
LOC101171829
Troponin C type 2 (fast).
   
  
 0.707
ampd1
AMP deaminase; Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family.
   
  
 0.693
tmod4
Tropomodulin 4 (muscle).
   
  
 0.680
LOC101155449
Uncharacterized protein.
   
 
 0.676
LOC101164086
Actinin, alpha 2b.
   
 
 0.676
actn3
Actinin alpha 3b.
   
 
 0.676
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.