Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101155107Uncharacterized protein. (650 aa)    
Predicted Functional Partners:
unc5a
Unc-5 netrin receptor A.
    
 0.975
lamb1
Laminin, beta 1a.
     
 
0.916
lamb2
Laminin, beta 2 (laminin S).
     
 
0.916
LOC101165682
Laminin, beta 1b.
     
 
0.911
LOC101158765
Laminin, beta 2-like.
     
 
0.911
lamb3
Uncharacterized protein.
     
 
0.910
NTN4
Netrin 4.
  
  
 
0.902
megf9
Uncharacterized protein.
 
   
 
0.901
unc5b
Unc-5 netrin receptor B.
    
 
 0.888
LOC101157960
Unc-5 netrin receptor C.
    
 0.882
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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