STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101155107Uncharacterized protein. (650 aa)    
Predicted Functional Partners:
unc5a
Unc-5 netrin receptor A.
     
 0.750
dcc
DCC netrin 1 receptor.
   
 0.685
neo1
Neogenin 1b.
   
 0.685
H2M6A1_ORYLA
Uncharacterized protein.
 
  
0.681
ntng1
Netrin g1a.
    
0.664
LOC105357770
Vav 3 guanine nucleotide exchange factor b.
    
0.664
H2MZJ3_ORYLA
Laminin, alpha 5.
    
0.653
ENSORLP00000045804
Uncharacterized protein.
    
0.653
igdcc4
Immunoglobulin superfamily, DCC subclass, member 4.
   
 0.629
LOC101157960
Unc-5 netrin receptor C.
     
 0.609
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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