Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cpoCarboxypeptidase O. (330 aa)    
Predicted Functional Partners:
agt
Angiotensinogen; Belongs to the serpin family.
   
 
 0.652
cpn1
Carboxypeptidase N, polypeptide 1.
   
 
 0.639
pla2g1b
Phospholipase A(2).
   
  
 0.566
c5
Uncharacterized protein.
   
 0.518
LOC101172168
Carnitine palmitoyltransferase 1Cb; Belongs to the carnitine/choline acetyltransferase family.
      
 0.498
LOC101155805
Uncharacterized protein; Belongs to the carnitine/choline acetyltransferase family.
      
 0.498
cpe
Carboxypeptidase E.
     
 0.481
LOC101171360
Perilipin 6.
      
 0.469
ENSORLP00000032842
Carboxypeptidase Z.
  
 
 0.428
serpinf2
SERPIN domain-containing protein; Belongs to the serpin family.
   
 
 0.408
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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