STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hepacam2HEPACAM family member 2. (457 aa)    
Predicted Functional Partners:
vps50
VPS50 EARP/GARPII complex subunit.
 
    
 0.779
SAMD9
Sterile alpha motif domain containing 9.
      
 0.717
LOC101161191
Family with sequence similarity 113.
      
 0.708
LOC101163430
Interferon regulatory factor.
    
 0.707
napg
N-ethylmaleimide-sensitive factor attachment protein, gamma b.
     
 0.671
ugcg
UDP-glucose ceramide glucosyltransferase.
   
   0.660
dffb
DNA fragmentation factor, beta polypeptide (caspase-activated DNase).
    
 
 0.609
LOC101172833
Tumor necrosis factor receptor superfamily, member a.
    
   0.609
snx13
Sorting nexin 13.
      
 0.535
txndc11
Thioredoxin domain containing 11.
    
 0.480
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.