Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FGD6FYVE, RhoGEF and PH domain containing 6. (1174 aa)    
Predicted Functional Partners:
LOC101162152
Ras-related GTP binding A.
    
 
 0.511
LOC101164976
Nuclear receptor subfamily 2, group C, member 1.
      
 0.508
uhmk1
U2AF homology motif (UHM) kinase 1.
      
 0.498
rptor
Regulatory associated protein of MTOR, complex 1.
    
 
 0.456
LOC110014938
Single-pass membrane protein with aspartate-rich tail 1b.
    
 0.454
smdt1
Single-pass membrane protein with aspartate-rich tail 1a.
    
 0.454
ENSORLP00000042440
Uncharacterized protein.
    
 0.454
LOC101160267
Mitochondrial calcium uniporter dominant negative beta subunit.
    
 0.437
Mcu
Mitochondrial calcium uniporter.
    
 0.437
mcub
MCU domain-containing protein.
    
 0.437
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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