STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FGD6FYVE, RhoGEF and PH domain containing 6. (1174 aa)    
Predicted Functional Partners:
micu1
Mitochondrial calcium uptake 1.
   
 0.479
micu2
Mitochondrial calcium uptake 2.
   
 0.479
LOC110014938
Single-pass membrane protein with aspartate-rich tail 1b.
     
 0.426
smdt1
Single-pass membrane protein with aspartate-rich tail 1a.
     
 0.426
ENSORLP00000042440
Uncharacterized protein.
     
 0.426
LOC101160267
Mitochondrial calcium uniporter dominant negative beta subunit.
   
 
 0.420
LOC101162152
Ras-related GTP binding A.
    
 
 0.420
Mcu
Mitochondrial calcium uniporter.
   
 
 0.420
mcub
MCU domain-containing protein.
   
 
 0.420
phb2
Prohibitin.
    
  0.408
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.