Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
miga2Mitoguardin 2. (591 aa)    
Predicted Functional Partners:
miga1
Mitoguardin 1.
    
  0.969
dolpp1
Dolichyldiphosphatase 1.
 
    
 0.763
vapa
VAMP (vesicle-associated membrane protein)-associated protein A, like.
    
 
 0.675
LOC101174096
VAMP (vesicle-associated membrane protein)-associated protein B and C.
    
 
 0.675
VAPB
VAMP associated protein B and C.
    
 
 0.657
LOC101164300
RNA pseudouridine synthase D4.
   
  
 0.640
foxred1
FAD-dependent oxidoreductase domain containing 1.
   
  
 0.637
ptpa
Serine/threonine-protein phosphatase 2A activator; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.
      
 0.627
pld6
Phospholipase D family, member 6.
    
 
 0.617
vps13d
Vacuolar protein sorting 13 homolog D.
      
 0.608
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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