STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
frem2FRAS1 related extracellular matrix 2a. (3124 aa)    
Predicted Functional Partners:
ENSORLP00000038034
Uncharacterized protein.
 
  
  0.980
itgb1
Integrin beta; Belongs to the integrin beta chain family.
    
  0.906
itga8
Integrin, alpha 8; Belongs to the integrin alpha chain family.
    
  0.904
npnt
Nephronectin a.
    
  0.812
fau
40S ribosomal protein S30.
   
  0.640
serpinh1
Serpin peptidase inhibitor, clade H (heat shock protein 47), member 1b; Belongs to the serpin family.
     
 0.616
LOC101164651
Lysyl oxidase-like 2b.
    
 0.532
LOC101160447
RAN binding protein 2.
   
  0.504
adam15
ADAM metallopeptidase domain 15.
      
 0.500
nrp2
Neuropilin; Belongs to the neuropilin family.
    
 0.464
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.