STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101157253Distal-less homeobox 4b. (258 aa)    
Predicted Functional Partners:
Rnase4
RNAse_Pc domain-containing protein; Belongs to the pancreatic ribonuclease family.
      
 0.584
foxi2
Forkhead box i1.
    
 
 0.570
LOC101165809
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
      
 0.558
LOC111948029
Forkhead box I3b.
    
 
 0.504
LOC101159015
Methyltransferase-like protein; Belongs to the methyltransferase superfamily. METL family.
      
 0.487
fgf3
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
      
 0.463
LOC101172686
Endothelin receptor type Ab; Belongs to the G-protein coupled receptor 1 family.
      
 0.437
pax8
Paired box 8.
      
 0.414
LOC101175327
Atonal bHLH transcription factor 1b.
   
  
 0.403
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.