STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101164976Nuclear receptor subfamily 2, group C, member 1. (610 aa)    
Predicted Functional Partners:
terf2
HTH myb-type domain-containing protein.
     
 0.654
ncor1
Nuclear receptor corepressor 1.
   
 0.650
ncor2
Nuclear receptor corepressor 2.
   
 0.650
znf276
Zinc finger protein 276.
    
 0.646
med1
Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
    
  0.624
LOC101173559
JAZF zinc finger 1b.
    
 
 0.621
JAZF1
JAZF zinc finger 1b.
    
 
 0.621
LOC101161711
Zinc finger and BTB domain containing 48.
    
 0.609
znf827
Zinc finger protein 827.
    
 0.603
naif1
Nuclear apoptosis inducing factor 1.
   
  
 0.593
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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