STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dlx3Distal-less homeobox 3b. (278 aa)    
Predicted Functional Partners:
foxi2
Forkhead box i1.
    
 
 0.704
gata3
Uncharacterized protein.
   
  
 0.688
meis1
Meis homeobox 1 b.
    
 
 0.586
meis2
Meis homeobox 2a.
    
 
 0.586
LOC101171546
Meis homeobox 2b.
    
 
 0.586
bambi
BMP and activin membrane-bound inhibitor homolog; Negatively regulates TGF-beta signaling. Belongs to the BAMBI family.
   
  
 0.570
LOC100125524
Forkhead box N1.
    
 
 0.560
pax8
Paired box 8.
      
 0.543
lamb3
Uncharacterized protein.
      
 0.534
hcrt
Hypocretin (orexin) neuropeptide precursor.
   
  
 0.529
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.