Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cep162Centrosomal protein 162. (888 aa)    
Predicted Functional Partners:
bbs7
Bardet-Biedl syndrome 7.
   
  
 0.744
LOC101170769
Centrin, EF-hand protein, 2.
     
 0.712
ENSORLP00000029707
Uncharacterized protein.
   
 
 0.707
Cep290
Uncharacterized protein.
   
 
 0.707
ENSORLP00000044416
Uncharacterized protein.
   
 
 0.707
tmem67
Transmembrane protein 67.
      
 0.694
cep164
WW domain-containing protein.
      
 0.690
nek4
NIMA-related kinase 4.
    
   0.666
cep120
Centrosomal protein 120.
   
 
 0.656
fbf1
Uncharacterized protein.
    
 
 0.645
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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